Application

Previous versions

Altius Institute





Description

  ▸ eFORGE is the epigenetic equivalent of FORGE, using EWAS rather than GWAS data.

▸ eFORGE identifies tissue or cell type-specific signal by analysing a minimum set of 5 differentially methylated positions (DMPs) for overlap with DNase I hypersensitive sites (DHSs) compared to matched background DMPs and provides both graphical and tabulated outputs.

▸ eFORGE can now analyse Illumina 850k EPIC array data, as well as Illumina 450k array data.
   

Data

Paste data:
Clear box
Upload file:
Provide file URL:

Input Options
Input file format:
Name (optional):
Platform:

Analysis Options
Analyse data from:
Proximity:
Depletion:
Background repetitions (100-1000):
Significance threshold:
      Strict:
      Marginal:

Credits

Breeze CE, Paul DS, van Dongen J, Butcher LM, Ambrose JC, Barrett JE, Lowe R, Rakyan VK, Iotchkova V, Frontini M, Downes K, Ouwehand WH, Laperle J, Jacques PÉ, Bourque G, Bergmann AK, Siebert R, Vellenga E, Saeed S, Matarese F, Martens JH, Stunnenberg HG, Teschendorff AE, Herrero J, Birney E, Dunham I, Beck S (2016). eFORGE: A Tool for Identifying Cell Type-Specific Signal in Epigenomic Data. Cell Reports 17(8):2137-2150. doi: 10.1016/j.celrep.2016.10.059